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Génomique fonctionnelle des phytopathosystèmes


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ORCID 0000-0002-7046-6194

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Karen Cristine Gonçalves dos Santos, Isabel Desgagné-Penix, Hugo Germain.Custom selected reference genes outperform pre-defined reference genes in transcriptomic analysis.2020. BMC Genomics  21: 35


Roxanne Giguère-Tremblay, Genevieve Laperriere, Arthur de Grandpré, Amélie Morneault, Danny Bisson, Pierre-Luc Chagnon, Hugo Germain and Vincent Maire. Boreal Forest Multifunctionality Is Promoted by Low Soil Organic Matter Content and High Regional Bacterial Biodiversity in Northeastern Canada. 2020 Forest 11 (2) 149.


Aliyeh Rasoolizadeh, Parthasarathy Santhanam, Caroline Labbé, Sheelavanta Matha Shivaraj, Hugo Germain, Richard R Bélanger, Silicon influences the localization and expression of Phytophthora sojae effectors in interaction with soybean, Journal of Experimental Botany, 2020 , eraa101,


Sharma, N.; Fleurent, G.; Awwad, F.; Cheng, M.; Meddeb-Mouelhi, F.; Budge, S.M.; Germain, H.; Desgagné-Penix, I. Red Light Variation an Effective Alternative to Regulate Biomass and Lipid Profiles in Phaeodactylum tricornutumAppl. Sci. 202010, 2531.


Merindol, N. Pépin, G., Marchand, C., Rheault, M., Peterson, C., Poirier, A., Houle, C., Germain, H., Danylo, A. SARS-CoV-2 detection by direct rRT-PCR without RNA extraction, Journal of Clinical Virology, 2020, Volume 128, 2020,


Fradj, N.; de Montigny, N.; Mérindol, N.; Awwad, F.; Boumghar, Y.; Germain, H.; Desgagné-Penix, I. A First Insight into North American Plant Pathogenic Fungi Armillaria Sinapina Transcriptome. Biology 20209, 153.


Madina, M.H., Rahman, M.S., Huang, X., Zhang, Y., Zheng, H., Germain, H. 2020. A poplar rust effector protein associates with protein disulfide isomerase and enhances plant susceptibility. Biology, 9, 294


Nouemssi, S.B., Ghribi, M., Beauchemin, M., Meddeb-Mouelhi, F., Germain, H., Desgagné-Penix, I. Rapid and efficient colony-PCR for high throughput screening of gentically transformed Chlamydomonas reinhardtii. Life


Cloutier, L., Merindol, N., Pépin, G., Marcoux-Huard, C., Vasil, P. A., Houle, C., Todkar, S., Lehoux, M. C., Houle, N., Germain, H., & Danylo, A. (2020). Asymptomatic carriers of COVID-19 in a confined adult community population in Quebec: A cross-sectional studyAmerican journal of infection control, S0196-6553(20)30781-1. Advance online publication.


Poonia, A.K., Mishra, S.K., Sirohi, P., Chaudary, R., Meenakshi, K., Germain, H., Chauhan, H. Overexpression of wheat transcription factor (TaHsfA6b) provides thermotolerance in barleyPlanta 252, 53 (2020).



Lorrain, C., Santos K.C.G., Germain, H., Hecker, A., Duplessis, S. 2019. Advances in undertsanding obligate biotrophy in rust fungi. New Phytologist 


Fradj, N., dos Santos, K.C.G., de Montigny, N., Awwad, F., Boumghar, Y, Germain, H. and Desgagné-Penix, I. 2019. RNA-Seq de Novo Assembly and Differential Transcriptome Analysis of Chaga (Inonotus obliquus) Cultured with Different Betulin Sources and the Regulation of Genes Involved in Terpenoid Biosynthesis. International Journal of Molecular Sciences. 20, 4334; doi:10.3390/ijms20184334


Mst Hur Madina, Md Saifur Rahman, Huanquan Zheng, Hugo Germain. Vacuolar membrane structures and their roles in plant–pathogen interactions 2019. Plant Molecular Biology 101 (4--5) DOI 10.1007/s11103-019-00921-y


Laperriere, G.,Chagnon, P.-L.,Giguère-Tremblay R.,Morneault, A., Bisson, D., Maire V., Germain H. Estimation of Fungal Diversity and Identification of Major Abiotic Drivers Influencing Fungal Richness and Communities in Northern Temperate and Boreal Quebec Forests. Forests 2019, 10(12), 1096;


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